IDA - Intelligent Data Analysis Research Group

Publications

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2012

Journal articles

  • Andrea Szabóová, Ondřej Kuželka, Filip Železný and Jakub Tolar. Prediction of DNA-binding Propensity of Proteins by the Ball-Histogram Method using Automatic Template Search. BMC Bioinformatics, 13, Sup 10 , 2012. [full text] [BibTeX]
  • Andrea Szabóová, Ondřej Kuželka, Filip Železný and Jakub Tolar. Prediction of DNA-binding proteins from relational features. Proteome Science, 10 , 2012. [full text] [BibTeX]
  • Helena Líbalová, Kateřina Uhlířová, Jiří Kléma, Miroslav Machala, Radim J Šrám, Miroslav Ciganek and Jan Topinka. Global gene expression changes in human embryonic lung fibroblasts induced by organic extracts from respirable air particles. Particle and Fiber Toxicology, 9 , 2012. [BibTeX]
  • Mariana Urbanová, Ivana Brabcová, Eva Girmanová, Filip Železný and Ondřej Viklický. Differential Regulation of the Nuclear Factor-κB Pathway by Rabbit Antithymocyte Globulins in Kidney Transplantation. Transplantation, 93 :589-596, 2012. [BibTeX]
  • Matěj Holec, Jiří Kléma, Filip Železný and Jakub Tolar. Comparative Evaluation of Set-Level Techniques in Predictive Classification of Gene Expression Samples. BMC Bioinformatics, 13 :S15, 2012. [BibTeX]
  • Miloš Krejník and Jiří Kléma. Empirical Evidence of the Applicability of Functional Clustering through Gene Expression Classification. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 9 :788-798, 2012. [BibTeX]
  • Petr Pošík and Jiří Kubalík. Experimental Comparison of Six Population-Based Algorithms for Continuous Black Box Optimization. Evolutionary Computation, 20 :483-508, 2012. [BibTeX]
  • Petr Pošík and Waltraud Huyer. Restarted Local Search Algorithms for Continuous Black Box Optimization. Evolutionary Computation, 20 :575-607, 2012. [BibTeX]
  • Petr Pošík, Waltraud Huyer and Laszló Pál. A Comparison of Global Search Algorithms for Continuous Black Box Optimization. Evolutionary Computation, 20 :509-541, 2012. [BibTeX]

Conference papers

  • Andrea Szabóová, Ondřej Kuželka and Filip Železný. Prediction of Antimicrobial Activity of Peptides using Relational Machine Learning. IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2012), 2012. [full text] [BibTeX]
  • Ondřej Kuželka, Andrea Szabóová and Filip Železný. Bounded Lest General Generalization. Inductive Logic Programming, 2012. [full text] [BibTeX]
  • Ondřej Kuželka, Andrea Szabóová and Filip Železný. Extending the Ball-Histogram Method with Continuous Distributions and an Application to Prediction of DNA-Binding Proteins. IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2012), 2012. [full text] [BibTeX]
  • Ondřej Kuželka, Andrea Szabóová and Filip Železný. Reducing Examples in Relational Learning with Bounded-Treewidth Hypotheses. Proceedings of the Workshop on New Frontiers in Mining Complex Patterns (NFMCP 2012), 2012. [full text] [BibTeX]
  • Ondřej Kuželka, Andrea Szabóová and Filip Železný. Relational Learning with Polynomials. IEEE International Conference on Tools with Artificial Intelligence (ICTAI 2012), 2012. [full text] [BibTeX]
  • Petr Pošík and Václav Klemš. Benchmarking the Differential Evolution with Adaptive Encoding on Noiseless Functions. GECCO 2012: Genetic and Evolutionary Computation Conference Companion, 2012. [BibTeX]
  • Petr Pošík and Václav Klemš. JADE, an Adaptive Differential Evolution Algorithm, Benchmarked on the BBOB Noiseless Testbed. GECCO 2012: Genetic and Evolutionary Computation Conference Companion, 2012. [BibTeX]

2011

Journal articles

  • Jan Zahálka and Filip Železný. An Experimental Test of Occam's Razor in Classification (Technical note). Machine Learning, 83 :475-481, 2011. [full text] [BibTeX]
  • Monika Žáková, Petr Křemen, Filip Železný and Nada Lavrač. Automatic Knowledge Discovery Workflow Composition through Ontology-Based Planning. IEEE Transactions on Automation Science and Engineering, 8 :253-264, 2011. [full text] [BibTeX]
  • Ondřej Kuželka and Filip Železný. Block-Wise Construction of Tree-like Relational Features with Monotone Reducibility and Redundancy. Machine Learning, 83 :163--192, 2011. [full text] [BibTeX]

Conference papers

  • Andrea Szabóová, Ondřej Kuželka, Filip Železný and Jakub Tolar. Searching for Important Amino Acids in DNA-binding Proteins for Histogram Methods (poster paper). The 7th International Symposium on Bioinformatics Research and Applications, 2011. [full text] [BibTeX]
  • Andrea Szabóová, Ondřej Kuželka, Sergio Morales E., Filip Železný and Jakub Tolar. Prediction of DNA-binding Propensity of Proteins by the Ball-Histogram Method. The 7th International Symposium on Bioinformatics Research and Applications, 2011. [full text] [BibTeX]
  • David Monge, Jiri Belohradsky, Carlos Garcia Garino and Filip Zelezny. A Performance Prediction Module for Workflow Scheduling.. HPC'2011: 4th Symposium on High-Performance Computing in Latin America, 2011. [full text] [BibTeX]
  • Jiri Belohradsky, David Monge, Filip Zelezny, Matej Holec and Carlos Garcia Garino. Template-Based Semi-Automatic Workflow Construction for Gene Expression Data Analysis (poster paper). CBMS 2011: the 24th INternational Symposium on Computer-Based Medical Systems, 2011. [full text] [BibTeX]
  • Ondřej Kuželka and Filip Železný. An Experimental Evaluation of Lifted Gene Sets. MIND 2011: Workshop on Mining Complex Entities from Network and Biomedical Data, 2011. [full text] [BibTeX]
  • Ondřej Kuželka and Filip Železný. Seeing the World through Homomorphism: An Experimental Study on Reducibility of Examples. ILP 2010: 20th International Conference on Inductive Logic Programming, Revised Papers, 2011. [full text] [BibTeX]
  • Ondřej Kuželka, Andrea Szabóová and Filip Železný. Gaussian Logic and Its Applications in Bioinformatics (poster paper). ACM-BCB 2011: ACM Conference on Bioinformatics, Computational Biology and Biomedicine, 2011. [full text] [BibTeX]
  • Ondřej Kuželka, Andrea Szabóová, Matěj Holec and Filip Železný. Gaussian Logic for Predictive Classification. ECML/PKDD 2011: European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases, 2011. [full text] [BibTeX]
  • Ondřej Kuželka, Andrea Szabóová, Matěj Holec and Filip Železný. Gaussian Logic for Proteomics and Genomics. MLSB 2011: the 5th International Workshop on Machine Learning in Systems Biology, 2011. [BibTeX]
  • Petr Pošík and Stanislav Vaníček. Parameter-less local optimizer with linkage identification for deterministic order-k decomposable problems. Proceedings of the 13th annual conference on Genetic and evolutionary computation, 2011. [full text] [BibTeX]
  • Radomír Černoch and Filip Železný. Probabilistic Rule Learning through Integer Linear Programming. Sborník příspěvků 10. ročníku konference ZNALOSTI, 2011. [full text] [BibTeX]
  • Radomír Černoch and Filip Železný. Speeding up planning through minimal generalizations of partially ordered plans. Inductive Logic Programming, 2011. [full text] [BibTeX]

2010

Journal articles

  • Kremmel T., Kubalík J. and Biffl S.. Software project portfolio optimization with advanced multiobjective evolutionary algorithms. Applied Soft Computing, , 2010. [BibTeX]
  • Kubalík J., Tichý P., Šindelář R., Staron and R.J.. Clustering Methods for Agent Distribution Optimization. Systems, Man, and Cybernetics, Part C: Applications and Reviews, IEEE Transactions on, 40 :78--86, 2010. [BibTeX]

Conference papers

  • Andrea Szabóová, Ondřej Kuželka, Filip Železný and Jakub Tolar. Mining Frequent Spatial Docking Patterns in Zinc Finger - DNA Complexes. Proceedings of the 7th European Symposium on Biomedical Engineering, 2010. [full text] [BibTeX]
  • Andrea Szabóová, Ondřej Kuželka, Filip Železný and Jakub Tolar. Prediction of DNA-Binding Proteins from Structural Features. Proceedings of the Fourth International Workshop on Machine Learning in Systems Biology, 2010. [full text] [BibTeX]
  • Filip Železný and Ondřej Kuželka. Taming the Complexity of Inductive Logic Programming (invited talk). SOFSEM 2010: 36th International Conference on Current Trends in Theory and Practice of Computer Science, 2010. [BibTeX]
  • Matěj Holec, Filip Železný, Jiří Kléma and Jakub Tolar. A Comparative Evaluation of Gene Set Analysis Techniques in Predictive Classification of Expression Samples. International Conference on Bioinformatics, Computational Biology, Genomics and Chemoinformatics (BCBGC-2010), 2010. [full text] [BibTeX]
  • Nikolaus Hansen, Anne Auger, Raymond Ros, Steffen Finck and Petr Pošík. Comparing results of 31 algorithms from the black-box optimization benchmarking BBOB-2009. GECCO '10: Proceedings of the 12th annual conference on Genetic and evolutionary computation, 2010. [full text] [BibTeX]
  • Ondřej Kuželka and Filip Železný. Shrinking Covariance Matrices using Biological Background Knowledge. Proceedings of the Fourth Workshop on Machine Learning in Systems Biology, 2010. [full text] [BibTeX]
  • Petr Pošík. Comparison of Cauchy EDA and BIPOP-CMA-ES algorithms on the BBOB noiseless testbed. GECCO '10: Proceedings of the 12th annual conference on Genetic and evolutionary computation, 2010. [full text] [BibTeX]
  • Petr Pošík. Comparison of Cauchy EDA and G3PCX algorithms on the BBOB noiseless testbed. GECCO '10: Proceedings of the 12th annual conference on Genetic and evolutionary computation, 2010. [full text] [BibTeX]
  • Petr Pošík. Comparison of Cauchy EDA and Rosenbrock's algorithms on the BBOB noiseless testbed. GECCO '10: Proceedings of the 12th annual conference on Genetic and evolutionary computation, 2010. [full text] [BibTeX]
  • Petr Pošík. Comparison of G3PCX and Rosenbrock's algorithms on the BBOB noiseless testbed. GECCO '10: Proceedings of the 12th annual conference on Genetic and evolutionary computation, 2010. [full text] [BibTeX]
  • Petr Pošík. Stochastic local search in continuous domains: questions to be answered when designing a novel algorithm. GECCO '10: Proceedings of the 12th annual conference on Genetic and evolutionary computation, 2010. [full text] [BibTeX]
  • Petr Pošík and Jiří Kubalík. Comparison of Cauchy EDA and pPOEMS algorithms on the BBOB noiseless testbed. GECCO '10: Proceedings of the 12th annual conference on Genetic and evolutionary computation, 2010. [full text] [BibTeX]
  • Roman Barták, Ondřej Kuželka and Filip Železný. Formulating Template Consistency in Inductive Logic Programming as a Constraint Satisfaction Problem. AAAI-10 Workshop on Abstraction, Reformulation, and Approximation (WARA-2010), 2010. [full text] [BibTeX]
  • Roman Barták, Ondřej Kuželka and Filip Železný. Using Constraint Satisfaction for Learning Hypotheses in Inductive Logic Programming. FLAIRS-23 - Florida Artificial Intelligence Research Society, The 23rd International Conference, 2010. [full text] [BibTeX]

Other

  • Jiří Bělohradský and David Monge. DDMF: A Framework for Distributed Datamining Applications. 2010. [BibTeX]
  • Matěj Holec, Filip Železný, Jiří Kléma and Jakub Tolar. Comparative Evaluation of Set-Level Techniques in Predictive Classification of Gene Expression Samples. 2010. [BibTeX]
  • Matěj Holec, Filip Železný, Jiří Kléma and Jakub Tolar. Towards Set-Level Predictive Classification of Gene Expression Data. 2010. [BibTeX]
  • Petr Pošík. Estimation-of-Distribution Algorithms for Numerical Optimization. 2010. [full text] [BibTeX]

2009

Journal articles

  • Filip Železný and Nada Lavrač. Guest editors’ introduction: Special issue on Inductive Logic Programming (ILP-2008). Machine Learning, 76 , 2009. [full text] [BibTeX]

Conference papers

  • Kubalik J. Black-box optimization benchmarking of prototype optimization with evolved improvement steps for noiseless function testbed. GECCO '09: Proceedings of the 11th Annual Conference Companion on Genetic and Evolutionary Computation Conference, 2009. [BibTeX]
  • Kubalík J.. Solving the Multiple Sequence Alignment Problem Using Prototype Optimization with Evolved Improvement Steps. Adaptive and Natural Computing Algorithms, 2009. [BibTeX]
  • Kubalík J.. Solving the Sorting Network Problem Using Iterative Optimization with Evolved Hypermutations. Genetic and Evolutionary Computation Conference 2009, 2009. [BibTeX]
  • Matěj Holec, Filip Železný, Jiří Kléma and Jakub Tolar. Integrating Multiple-Platform Expression Data through Gene Set Features. ISBRA 2009: 5th International Conference on Bioinformatics Research and Applications, 2009. [full text] [BibTeX]
  • Matěj Holec, Jiří Kléma, Filip Železný, Jiří Bělohradský and Jakub Tolar. Cross-Genome Knowledge-Based Expression Data Fusion. International Conference on Bioinformatics, Computational Biology, Genomics and Chemoinformatics (BCBGC-09), 2009. [BibTeX]
  • Ondřej Kuželka and Filip Železný. Block-Wise Construction of Acyclic Relational Features with Monotone Irreducibility and Relevancy Properties. ICML 2009: The 26th International Conference on Machine Learning, 2009. [full text] [BibTeX]
  • Ondřej Kuželka and Filip Železný. Block-Wise Construction of Acyclic Relational Features with Monotone Relevancy. ILP 2009: 19th International Conference on Inductive Logic Programming, 2009. [BibTeX]
  • Petr Pošík. BBOB-Benchmarking Two Variants of the Line-Search Algorithm. GECCO '09: Proceedings of the 11th annual conference companion on Genetic and evolutionary computation conference, 2009. [full text] [BibTeX]
  • Petr Pošík. BBOB-Benchmarking a Simple Estimation of Distribution Algorithm with Cauchy Distribution. GECCO '09: Proceedings of the 11th annual conference companion on Genetic and evolutionary computation conference, 2009. [full text] [BibTeX]
  • Petr Pošík. BBOB-Benchmarking the Generalized Generation Gap Model with Parent Centric Crossover. GECCO '09: Proceedings of the 11th annual conference companion on Genetic and evolutionary computation conference, 2009. [full text] [BibTeX]
  • Petr Pošík. BBOB-Benchmarking the Rosenbrock's Local Search Algorithm. GECCO '09: Proceedings of the 11th annual conference companion on Genetic and evolutionary computation conference, 2009. [full text] [BibTeX]
  • Petr Pošík. BBOB-benchmarking the DIRECT global optimization algorithm. GECCO '09: Proceedings of the 11th annual conference companion on Genetic and evolutionary computation conference, 2009. [full text] [BibTeX]
  • Petr Pošík. Stochastic Local Search Techniques with Unimodal Continuous Distribtions: A Survey. Applications of Evolutionary Computing, EvoWorkshops 2009, 2009. [full text] [BibTeX]

Other

  • Bruno Cremilleux, Arnaud Soulet, Jiří Kléma, Celine Hebert and Olivier Gandrillon. Discovering Knowledge from Local Patterns in SAGE Data. 2009. [BibTeX]
  • Jiří Kléma and Filip Železný, Igor Trajkovski, Filip Karel, Bruno Cremilleux and Jakub Tolar. Gene Expression Mining Guided by Background Knowledge. 2009. [BibTeX]

2008

Journal articles

  • BURYAN, Petr, TAUŠER and Josef. Strojové učení a modelování měnových kurzů v praxi finančního řízení. Ekonomický časopis, 56 :781–799, 2008. [BibTeX]
  • Godfrey C. Onwubolu, Petr Buryan and Frank Lemke. Modeling tool wear in end-milling using enhanced GMDH learning networks. The International Journal of Advanced Manufacturing Technology, :13, 2008. [BibTeX]
  • Igor Trajkovski, Filip Železný, Nada Lavrač and Jakub Tolar. Learning Relational Descriptions of Differentially Expressed Gene Groups. IEEE Trans. Sys Man Cyb C, 38(1) :16-25, 2008. [full text] [BibTeX]
  • J. Kléma, T. Holas, F. Železný and F. Karel. Dolování silných vzorů z lékařských sekvenčních dat. Lékař a technika, 4 :87--94, 2008. [BibTeX]
  • Jiri Klema, Lenka Novakova, Filip Karel, Olga Stepankova and Filip Zelezny. Sequential Data Mining: A Comparative Case Study in Development of Atherosclerosis Risk Factors. IEEE Transactions on Systems, Man, and Cybernetics, Part C: Applications and Reviews, 38 :3--15, 2008. [BibTeX]
  • Jiří Kléma, Sylvain Blachon, Arnaud Soulet, Bruno Cremilleux and Olivier Gandrilon. Constraint-Based Knowledge Discovery from SAGE Data. In Silico Biology, 8 :0014, 2008. [BibTeX]
  • Ondřej Kuželka and Filip Železný. A Restarted Strategy for Efficient Subsumption Testing. Fundamenta Informaticae, 89 :95-109, 2008. [full text] [BibTeX]

Conference papers

  • Daniel Novák, A. Pilný, Pavel Kordík, Štefan Holiga, Petr Pošík, Richard Černý and Richard Brzezny. Analysis of Vestibular-Ocular Reflex by Evolutionary Framework. International Conference on Artificial Neural Networks - ICANN 2008, 2008. [full text] [BibTeX]
  • Jiří Kléma, Jana Šilhavá, Pavel Smrž and Filip Železný. Gene expression data mining guided by genomic background knowledge. SOFSEM'08: Current Trends in Theory and Practice of Computer Science, 2008. [BibTeX]
  • Karel Moulík and Filip Železný. Predicting Gene Coexpression from Pathway Relations. Late Breaking Papers, the 18th International Conference on Inductive Logic Programming, 2008. [BibTeX]
  • Kubalik J., Tichý P., Šindelář R. and Staron R.J.. Agents Clustering within Multi-Agent System by means of. European Meetings on Cybernetics and Systems Research (EMCSR 2008), 2008. [full text] [BibTeX]
  • Matěj Holec, Filip Železný, Jiří Kléma, Jiří Svoboda and Jakub Tolar. Using Bio-Pathways in Relational Learning. Late Breaking Papers, the 18th International Conference on Inductive Logic Programming, 2008. [BibTeX]
  • Monika Žáková, Petr Křemen, Filip Železný and Nada Lavrač. Planning to Learn with a Knowledge Discovery Ontology. Planning to Learn Workshop (PlanLearn 2008) at ICML 2008, 2008. [BibTeX]
  • Monika Žáková, Petr Křemen, Filip Železný and Nada Lavrač. Using Ontological Reasoning and Planning for Data Mining Workflow Composition. SoKD: ECML/PKDD 2008 workshop on Third Generation Data Mining: Towards Service-oriented Knowledge Discovery, 2008. [full text] [BibTeX]
  • Ondřej Kuželka and Filip Železný. Fast Estimation of First-Order Clause Coverage through Randomization and Maximum Likelihood. ICML 2008: 25th International Conference on Machine Learning, 2008. [full text] [BibTeX]
  • Ondřej Kuželka and Filip Železný. HiFi: Tractable Propositionalization through Hierarchical Feature Construction. Late Breaking Papers, the 18th International Conference on Inductive Logic Programming, 2008. [BibTeX]
  • Ondřej Kuželka and Filip Železný. Learning to Plan and Planning to Learn via Merging Relational Machine Learning with Constraint Satisfaction (extended abstract). Planning to Learn Workshop (PlanLearn 2008) at ICML 2008, 2008, 2008. [BibTeX]
  • Petr Buryan. Accelerating frequent subgraph search by detecting low support structures. Inductive Logic Programming, 18th International Conference, 2008. [BibTeX]
  • Petr Pošík. Gaussian EDA and Truncation Selection: Setting Limits for Sustainable Progress. IEEE SMC International Conference on Distributed Human-Machine Systems (DHMS 2008), 2008. [full text] [BibTeX]
  • Petr Pošík. Preventing Premature Convergence in a Simple EDA via Global Step Size Setting. Parallel Problem Solving from Nature - PPSN X, 2008. [full text] [BibTeX]
  • Petr Pošík. Truncation Selection and Gaussian EDA: Bounds for Sustainable Progress in High-Dimensional Spaces. EvoWorkshops 2008, 2008. [full text] [BibTeX]

Other

  • Filip Železný and Nada Lavrač. Inductive Logic Programming, 18th International Conference. 2008. [BibTeX]
  • Petr Pošík. Trends in Numerical Optimization. 2008. [full text] [BibTeX]

2007

Journal articles

  • Karel Stryczek, Petr Horacek, Jiri Klema, Xavier Castells, Bob Stewart and Jean-Marie Geoffroy. Capitalizing on Aggregate Data for Gaining Process Understanding––Effect of Raw Material, Environmental and Process Conditions on the Dissolution Rate of a Sustained Release Product. Journal of Pharmaceutical Innovation, 2 :6-17, 2007. [BibTeX]
  • Mareš J., Szakácsova M., Železný F., Kléma J., Soukup V., Dušková J. and Babjuk M.. Differences in Gene Expression between Transitional Cell Carcinoma of The Human Bladder with Short and Prolonged Recurrence-Free Period Using Oligonucleotide Micorarrays (Poster Abstract). European Journal of Human Genetics, 15 :157, 2007. [BibTeX]
  • Petr Buryan. SensiNet a bezdrátové sítě typu mesh. Automa, 6 :30-31, 2007. [BibTeX]

Conference papers

  • Aline Paes, Filip Železný, Gerson Zaverucha, David Page and Ashwin Srinivasan. ILP Through Propositionalization and Stochastic k-Term DNF Learning. Procs of the 16th Int. Conference on Inductive Logic Programming, 2007. [full text] [BibTeX]
  • Filip Karel and Jiri Klema. Quantitative association rule mining in genomics. Proceedings of the workshop Prior Conceptual Knowledge in Machine LEarning and Data Mining, 2007. [full text] [BibTeX]
  • Godfrey Onwubolu, Petr Buryan and Ajith Abraham. Self organizing Data Mining Using Enhanced Group Method Data Handling Approach. Proceedings of the First European Conference on Data Mining, Lisbon, Portugal, ISBN 978-972-8924-40-9, 2007. [full text] [BibTeX]
  • Kubalik J. and Mordinyi R.. Optimizing Events Traffic in Event-based Systems by means of Evolutionary Algorithms. Proceedings of the The Second International Conference on Availability, Reliability and Security, 2007. [full text] [BibTeX]
  • Monika Žáková and Filip Železný. Exploiting Term, Predicate, and Feature Taxonomies in Propositionalization and Propositional Rule Learning. ECML 2007: 18th European Conference on Machine Learning, 2007. [full text] [BibTeX]
  • Monika Žáková and Filip Železný. Using Taxonomic Background Knowledge in Propositionalization and Rule Learning. Proceedings of the Workshop on Prior Conceptual Knowledge in Machine Learning and Data Mining at ECML/PKDD 2007, 2007. [BibTeX]
  • Monika Žáková, Filip Železný, Javier Garcia-Sedano, Cyril Masia Tissot, Nada Lavrač, Petr Křemen and Javier Molina. Relational Data Mining Applied to Virtual Engineering of Product Designs. Procs of the 16th Int. Conference on Inductive Logic Programming, 2007. [full text] [BibTeX]
  • Monika Žáková, Filip Železný, Petr Křemen, Cyril Massia-Tissot and Nada Lavrač. Relational Data Mining through Propositionalization and Subsequent Propositional Search for Semantic Virtual Engineering. KCAP Workshop on Knowledge Management and Semantic Web for Engineering Design(KW4ED'07), 2007. [BibTeX]
  • Monika Žáková, Petr Křemen, Javier A. Garcia-Sedano, Cyril Masia Tisot, Nada Lavrač, Filip Železný and Javier Molina. Relational Pattern and Subgroup Discovery in CAD Documents. Znalosti 2007 - Sborník příspěvků 6. ročníku konference, 2007. [full text] [BibTeX]
  • Ondřej Kuželka and Filip Železný. A Restart Strategy for Fast Subsumption Check and Coverage Estimation. Proceedings of the 6th Int. Workshop on Multi-Relational Data Mining, at ECML/PKDD 2007, 2007. [full text] [BibTeX]
  • Onwubolu, G. C., Buryan, P., Garimella, S., Ramachandran, V., Buadromo, V., and Abraham and A.. Self organizing Data Mining for Weather Forecasting. Proceedings of the First European Conference on Data Mining, 2007. [BibTeX]
  • Petr Buryan. Enhanced MIA GMDH algorithm. Proceedings of International Workshop on Inductive Modeling, 2007. [BibTeX]
  • Petr Pošík. Optimization via Classification. MENDEL 2007 - 13th International Conference on Soft Computing, 2007. [full text] [BibTeX]
  • Petr Pošík and Vojtěch Franc. Estimation of Fitness Landscape Contours in EAs. GECCO 2007 - Proceedings of the 9th annual conference on Genetic and Evolutionary Computation, 2007. [full text] [BibTeX]

Other

  • Filip Železný. O empirickém výzkumu algoritmického objevování. 2007. [BibTeX]
  • Petr Pošík. On the use of probability models and coordinate transforms in evolutionary algorithms. 2007. [full text] [BibTeX]
  • Soulet A., Klema J. and Cremilleux B.. Efficient Mining Under Rich Constraints Derived from Various Datasets. 2007. [BibTeX]

2006

Journal articles

  • Filip Železný and Nada Lavrač. Propositionalization-Based Relational Subgroup Discovery with RSD. Machine Learning, special issue on statistical relational learning, 62 :33-63, 2006. [full text] [BibTeX]
  • Filip Železný, Ashwin Srinivasan and C. David Page. Randomised Restarted Search in ILP. Machine Learning, 64 :183--208, 2006. [full text] [BibTeX]
  • Jiří Kléma and Ahmad Almonayyes. Automatic categorization of fanatic texts using random forests.. Kuwait Journal of Science and Engineering, 33 :1--14, 2006. [BibTeX]
  • Petr Buryan. Measurement of corrosion processes. Automa, 8-9/2006 :12-14, 2006. [BibTeX]
  • Petr Buryan. Čtečka čárových kódů na bázi MEMS. Automa, 5 :17-18, 2006. [BibTeX]

Conference papers

  • Aline Paes, Filip Železný, Gerson Zaverucha, David Page and Aswhin Srinivasan. ILP through Propositionalization and Stochastic k-term DNF Learning. 16th International Conference on Inductive Logic Programming, Short Papers, 2006. [full text] [BibTeX]
  • Arnaud Soulet, Jiří Kléma and Bruno Cremilleux. Efficient Mining under Flexible Constraints through Several Datasets. Proceedings of 5th International Workshop on Knowledge Discovery in Inductive Databases, 2006. [full text] [BibTeX]
  • Filip Karel. Adaptivita v e-learningu. Konference Pedagogický software 2006, 2006. [full text] [BibTeX]
  • Filip Karel. Quantitative and Ordinal Association Rules Mining (QAR Mining). Knowledge-Based Intelligent Information and Engineering Systems, 2006. [full text] [BibTeX]
  • Filip Karel and Jiří Kléma. Adaptivity in e-learning. In Current Developments in Technology-Assisted Education, 2006. [full text] [BibTeX]
  • Filip Železný, Jakub Tolar, Nada Lavrač and Olga Štěpánková. Summarizing gene-expression-based classifiers by meta-mining comprehensible relational patterns. BioMED 2006: The Fourth IASTED International Conference on Biomedical Engineering, 2006. [full text] [BibTeX]
  • Igor Trajkovski, Filip Železný, Jakub Tolar and Nada Lavrač. Relational Descriptive Analysis of Gene Expression Data. STAIRS-2006 (3rd European Starting AI Researcher Symposium) at the 17th European Conference on Artificial Intelligence, 2006. [full text] [BibTeX]
  • Igor Trajkovski, Filip Železný, Jakub Tolar and Nada Lavrač. Relational Subgroup Discovery for Descriptive Analysis of Microarray Data. Proceedings of the 2n Int Sympos on Computational Life Science, 2006. [full text] [BibTeX]
  • Jiri Kubalik. Real-Parameter Optimization by Iterative Prototype Optimization with Evolved Improvement Steps. {IEEE} Congress on Evolutionary Computation, 2006. [full text] [BibTeX]
  • Jiri Kubalik and Jan Faigl. Iterative Prototype Optimisation with Evolved Improvement Steps. Proceedings of the 9th European Conference on Genetic Programming, 2006. [BibTeX]
  • Jiří Kléma and Ahmad Almonayyes. Classification of Fanatic Texts Using Random Forests. Current Research in Information Sciences and Technologies, 2006. [BibTeX]
  • Jiří Kléma, Arnaud Soulet, Bruno Cremilleux, Sylvain Blachon and Olivier Gandrilon. Mining Plausible Patterns from Genomic Data. Proceedings of Nineteenth IEEE International Symposium on Computer-Based Medical Systems, 2006. [BibTeX]
  • Jiří Kubalík, Petr Pošík and Jan Herold. A Selecto-recombinative Genetic Algorithm with Continuous Chromosome Reconfiguration. Parallel Problem Solving from Nature - {PPSN-IX}, 2006. [full text] [BibTeX]
  • Kamil Matoušek, Monika Žáková, Olga Štěpánková and Taťána Maříková. Uncertain Temporal Support for Medical Record Ontology. Cybernetics and Systems 2006, 2006. [full text] [BibTeX]
  • Kubalik J. Real-Parameter Optimization by Iterative Prototype Optimization with Evolved Improvement Steps. IEEE Congress on Evolutionary Computation, 2006. CEC 2006, 2006. [BibTeX]
  • Kubalík J. and Faigl J.. Iterative Prototype Optimisation with Evolved Improvement Steps. EuroGP, 2006. [BibTeX]
  • Monika Žáková, Filip Železný, Javier Garcia-Sedano, Cyril Masia Tissot and Nada Lavrač. Relational Data Mining Applied to Virtual Engineering of Product Designs. IL'06 16th International Conference on Inductive Logic Programming - Short Papers, 2006. [full text] [BibTeX]
  • Thierry Charnois, Nicolas Durand and Jiří Kléma. Automated Information Extraction from Gene Summaries. Proceedings of The Workshop on Data and Text Mining for Integrative Biology, 2006. [full text] [BibTeX]

Other

  • Kubalík J., Rothkrantz L.J.M. and Lažanský J. Genetic Algorithms with Limited Convergence. 2006. [BibTeX]
  • Magnus Thylander and Petr Pošík. Ant Colony and Edge Histogram Resampling. 2006. [BibTeX]
  • Petr Křemen. Description Logics I.. 2006. [BibTeX]
  • Petr Křemen. Description Logics II.. 2006. [BibTeX]
  • Petr Křemen. Hybrid languages. 2006. [BibTeX]

2005

Journal articles

  • Jan Kout, Tomáš Vlček and Jiří Kléma. Predictive System for Multivariate Time Series. Automa International - Trade Journal for Industrial Automation, , 2005. [BibTeX]
  • Jiří Kléma, Jiří Kubalík and Lenka Lhotská. Optimized Model Tuning in Medical Systems. Computer Methods and Programs in Biomedicine, 80 :17-28, 2005. [BibTeX]

Conference papers

  • Filip Karel and Jiří Kléma. Ordinální asociační pravidla. Konference Znalosti 2005, 2005. [full text] [BibTeX]
  • Filip Železný. Efficient Construction of Relational Features. Proceedings of the 4th Int. Conf. on Machine Learning and Applications, 2005. [full text] [BibTeX]
  • Filip Železný. Efficient Sampling in Relational Feature Spaces. Proceedings of the 15th Int. Conf. on Inductive Logic Programming, 2005. [full text] [BibTeX]
  • Filip Železný. How Computers Discover How Computers Discover (a mini-review of algorithmic meta-discovery). Czech-Argentine Biennale "e-Golems", 2005. [BibTeX]
  • Filip Železný. Relationalization: a Framework for Reconstructing Structures from Propositional Descriptions. Relationalization: a Framework for Reconstructing Structures from Propositional Descriptions, 2005. [full text] [BibTeX]
  • Filip Železný, Jakub Tolar, Nada Lavrač and Olga Štěpánková. Relational Subgroup Discovery for Gene Expression Data Mining. EMBEC'05: the 3rd European Medical & Biological Engineering Conf. / IFMBE European Conf. on Biomedical Engineering, 2005. [full text] [BibTeX]
  • Jan Suchý and Jiří Kubalík. Inducing Diverse Decision Forests with Genetic Programing.. Genetic Programming, 8th European Conference, EuroGP2005, Proceedings, 2005. [full text] [BibTeX]
  • Jiri Kubalik. Using Genetic Algorithms with Real-coded Binary Representation for Solving Non-stationary Problems. Adaptive and Natural Computing Algoritms {ICANNGA 2005}, 2005. [full text] [BibTeX]
  • Jiří Kléma, Tomáš Holas, Filip Karel and Filip Železný. Mining the Strongest Patterns In Medical Sequential Data. 3rd European Medical & Biological Engineering Conf. / IFMBE European Conf. on Biomedical Engineering, 2005. [full text] [BibTeX]
  • Martin Rehák, Jan Tožicka, Michal Pěchouček and Filip Železný. An Abstract Architecture for Computational Reflection in Multi-Agent Systems. Intelligent Agent Technology, an IEEE/WIC/ACM International Conference, 2005. [BibTeX]
  • Monika Žáková, Olga Štěpánková and Taťána Maříková. MedAT: Medical Resource Annotation Tool. Proceedings of EMBEC 2005, 2005. [full text] [BibTeX]
  • Petr Aubrecht and Monika Žáková. Data Preprocessing Using Ontologies. Mobile Computing Meets Knowledge Management, 2005. [full text] [BibTeX]
  • Petr Aubrecht, Monika Žáková and Zdeněk Kouba. Ontology Transformation Using Generalised Formalism. Znalosti 2005, 2005. [full text] [BibTeX]
  • Petr Pošík. On the Utility of Linear Transformations for Population-Based Optimization Algorithms. Preprints of the 16th World Congress of the International Federation of Automatic Control, 2005. [full text] [BibTeX]
  • Petr Pošík. Real-Parameter Optimization Using the Mutation Step Co-evolution. IEEE Congress on Evolutionary Computation, 2005. [full text] [BibTeX]
  • Petr Pošík. The Distribution Tree Model and Its Use In Estimation of Distribution Algorithms. MENDEL 2004, 2005. [BibTeX]
  • Petr Pošík. Vestibulo-ocular Reflex Signal Processing Using Evolutionary Algorithm. 3rd European Medical and Biological Engineering Conference - EMBEC'05, 2005. [full text] [BibTeX]

Other

  • Jiri Kubalik, Leon J.M. Rothkrantz and Jiri Lazansky. Genetic Algorithms with Limited Convergence. 2005. [full text] [BibTeX]

2004

Journal articles

  • Dragan Gamberger, Nada Lavrač, Filip Železný and Jakub Tolar. Induction of comprehensible models for gene expression datasets by subgroup discovery methodology. Jr Biomed Informatics, 37 :269-284, 2004. [full text] [BibTeX]
  • Filip Železný. Efficiency-conscious Propositionalization for Relational Learning. Kybernetika, 4 :275-292, 2004. [BibTeX]

Conference papers

  • Filip Železný, Ashwin Srinivasan and C. David Page. A Monte Carlo Study of Randomised Restarted Search in ILP. Procs. of the 14th Int. Conf. on Inductive Logic Programming, 2004. [BibTeX]
  • Jiri Kubalik. Binary or Real? Real-coded Binary!. Recent Advances in Soft Computing 2004, 2004. [full text] [BibTeX]
  • Jiri Kubalik, Marcel Jirina, Oldrich Stary, Lenka Lhotska and Jan Suchy. Application Of Soft Computing Techniques to Classification Of Licensed Subjects. Emerging Solutions for Future Manufacturing Systems, 2004. [full text] [BibTeX]
  • Jiří Kléma, Lenka Nováková, Filip Karel and Olga Štěpánková. Trend Analysis in Stulong Data. In ECML/PKDD'04 workshop proceedings: A Collaborative Effort in Knowledge Discovery from Databases, 2004. [full text] [BibTeX]
  • Nada Lavrač, Filip Železný and Sašo Džeroski. Local Patterns: Theory and Practice of Constraint-Based Relational Subgroup Discovery. Detecting Local Patterns - seminar Proceedings, 2004. [BibTeX]
  • Petr Pošík. Distribution Tree Building Real-Valued Evolutionary Algorithm. Parallel Problem Solving From Nature - PPSN VIII, 2004. [full text] [BibTeX]
  • Petr Pošík. Kernel Principal Components Analysis as an Efficient Crossover Operator in Real-Valued Evolutionary Algorithms. IEEE 4th International Conference on Intelligent Systems Design and Applications 2004, 2004. [full text] [BibTeX]

Other

  • Jan Suchý. Využití evolučních technik v lékařské diagnostice. 2004. [full text] [BibTeX]

2003

Conference papers

  • Jiri Kubalik, Jan Koutnik and Leon J. M. Rothkrantz. Grammatical Evolution with Bidirectional Representation. Genetic Programming, Proceedings of EuroGP'2003, 2003. [BibTeX]
  • Kubalík J., Koutník J. and Rothkrantz L.J.M.. Grammatical Evolution with Bidirectional Representation. EuroGP, 2003. [BibTeX]
  • Mark A. Krogel, Simon Rawles, Filip Železný, Peter Flach and Stefan Wrobel. Comparative Evaluation of Approaches to Propositionalization. Proceedings of the 13th International Conference on Inductive Logic Programming, 2003. [BibTeX]
  • Petr Pošík. Comparing Various Marginal Probability Models in Evolutionary Algorithms. MENDEL 2003, 2003. [full text] [BibTeX]
  • Petr Pošík. Estimation of Distribution Algorithms. Soft Computing and Complex Systems, 2003. [full text] [BibTeX]

Other

  • Petr Pošík. Optimization of Evolutionary Algorithms. 2003. [full text] [BibTeX]

2002

Conference papers

  • Filip Železný, Ashwin Srinivasan and C. David Page. Lattice-Search Runtime Distributions May Be Heavy-Tailed. Proceedings of the 12th International Conference on Inductive Logic Programming, 2002. [full text] [BibTeX]
  • Filip Železný, Jiří Zídek and Olga Štěpánková. A Learning System for Decision Support in Telecommunications. Soft-Ware 2002: Computing in an Imperfect World, 1st Int. Conference, 2002. [BibTeX]
  • Nada Lavrač, Filip Železný and Peter Flach. RSD: Relational Subgroup Discovery through First-order Feature Construction. Proceedings of the 12th International Conference on Inductive Logic Programming, 2002. [BibTeX]
  • Petr Pošík. Equalization: New Evolutionary Strategy (Extended Version). MENDEL 2002, 2002. [BibTeX]

2001

Conference papers

  • Filip Železný. Learning Functions from Imperfect Positive Data. Proceedings of the 11th International Conference on Inductive Logic Programming, 2001. [BibTeX]

Other

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